FastQCFastQC Report
Wed 31 May 2023
EGAF00007942670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521228
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT64591.2391889921493089No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44460.8529856416002211No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20190.3873544782705457No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18900.36260523225920327No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13290.2549747903029001No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12080.23176038125350135No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10270.19703469498952475No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9450.18130261612960163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9000.1726691582186682No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8480.16269271796603407No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7560.1450420929036813No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7120.13660048961299087No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6770.1298855779044871No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6380.12240324771501147No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6210.11914171917088107No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6100.11703131834820846No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5980.11472906290529289No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5640.10820600581703209No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5630.10801415119678912No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5460.10475262265265872No Hit

[OK]Adapter Content

Adapter graph