FastQCFastQC Report
Wed 31 May 2023
EGAF00007942672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512601
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15040.2934055922637685No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13510.2635578159231059No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10920.21303118800002338No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10910.2128361044945289No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10340.20171634468134086No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10040.19586383951650504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8700.16972264978023843No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA6850.13363220126375094No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6650.1297305311538604No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6330.12348785897803555No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG6200.1209517734066067No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5590.10905167957144055No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5410.10554017647253908No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5130.10007783831869231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)