FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485379
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15480.3189260351189483No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11670.24043067376215288No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11460.23610415778185706No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9740.2006679316575295No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9150.18851248199860315No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8420.17347268835281296No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8400.1730606392118324No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7380.15204613302182418No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7240.1491617890349603No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6570.13535814281211178No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6220.12814728284495208No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5690.11722798060896741No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5610.11557978404504521No Hit
CACGTCCTTCATGAAGTTGTCGTTATAGTTCATTGCTTCTTCGG5450.11228339091720078No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5440.1120773663467105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)