FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485379
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42160.8685995891870064No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25100.5171216719305944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15600.32139832996483164No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11900.24516923888342926No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10760.2216824378475377No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9160.18871850656909342No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8660.1784172780445796No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8640.17800522890359904No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7480.15410637872672694No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC7110.14648346961858671No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6650.137006339376034No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6270.12917740569740346No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5790.11928822631387019No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5740.11825810346141881No Hit
GATTCCAAAGCCAATGCGTTCAACGCAGCTA5390.11104724349425912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)