FastQCFastQC Report
Sun 21 May 2023
EGAF00007942676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547980
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA64591.1786926530165336No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA35660.6507536771415015No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA31690.5783057775831235No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24420.44563670206941863No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22180.4047592977845907No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20200.3686265922113946No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14490.2644257089674805No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14020.25584875360414616No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13160.240154750173364No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG13120.23942479652542065No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11240.2051169750720829No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10280.18759808752144239No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9990.18230592357385306No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9830.17938610898207963No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8810.16077229095952408No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG8410.1534727544800905No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8110.14799810212051534No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8080.1474506368845578No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7630.13923865834519508No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7440.13577137851746415No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7060.12883681886200227No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6420.11715756049490858No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5950.10858060513157415No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5710.10420088324391401No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG5700.10401839483192817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)