FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507205
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44040.8682879703472954No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15650.3085537405979831No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8780.1731055490383573No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8730.17211975433996116No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8490.16738793978765984No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8470.1669936219083014No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8140.16048737689888704No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7750.15279817825139735No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7550.14885499945781291No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6440.12697035715341923No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6300.12421013199791012No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6180.12184422472175944No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5940.11711241016945811No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5680.11198627773779833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)