FastQCFastQC Report
Wed 31 May 2023
EGAF00007942679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533446
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12250.22963898876362368No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11710.21951612721812516No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10630.19927040412712815No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7330.13740847246019278No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7190.1347840268743228No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6570.12316148213689859No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6520.12222418014194501No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6280.1177251305661679No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5990.11228877899543722No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5930.11116401660149293No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5900.1106016354045208No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5590.10479036303580869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)