FastQCFastQC Report
Wed 31 May 2023
EGAF00007942680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533446
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45500.852944815407745No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25570.4793362402192537No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11910.22326533519793942No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10070.1887726217836482No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7920.14846863600064486No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7550.14153260123798847No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7270.1362837100662485No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6850.12841037330863855No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6480.12147433854598215No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6420.12034957615203788No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6100.11435084338433507No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5980.11210131859644651No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5920.11097655620250221No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5780.10835211061663223No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5720.10722734822268797No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5480.10272829864691084No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5430.10179099665195727No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5390.10104115505599441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)