FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences577086
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29800.5163875055017796No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26030.4510592875238699No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG17740.3074065217315963No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13610.23584006543218863No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12940.22423001077828955No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12770.22128417601535993No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11560.20031676387921382No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11320.1961579383315485No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG10350.17934935174306774No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9040.15664909562872778No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9010.15612924243526963No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8910.1543963984570757No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8820.15283683887670124No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8750.1516238480919655No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7910.1370679586751368No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7450.1290968763754449No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7420.12857702318198674No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7220.12511133522559897No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7220.12511133522559897No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7120.12337849124740506No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6980.12095250967793363No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6750.11696696852808766No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6730.11662039973244888No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6610.11454098695861623No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6490.11246157418478356No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6250.10830274863711821No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6240.10812946423929883No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6100.10570348266982738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)