FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences577086
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57861.0026235257829856No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19360.33547859417833736No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15730.2725763577698991No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15660.2713633669851634No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14500.25126237683811425No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14190.2458905605057132No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14120.24467756972097748No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12980.22492314836956712No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11980.2075947085876282No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11330.19633122272936793No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11090.19217239718170254No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10770.1866272964514821No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9460.16392704033714212No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9450.16375375593932273No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9040.15664909562872778No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8970.15543610484399203No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8740.1514505636941461No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8140.14105349982498275No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7780.13481526150348475No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7750.13429540831002656No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7190.1245914820321408No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7190.1245914820321408No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6890.11939295009755911No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6840.11852652810846218No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6820.1181799593128234No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6600.11436770256079683No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6370.11038216141095088No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6310.10934245502403454No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6080.10535691387418859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)