FastQCFastQC Report
Wed 31 May 2023
EGAF00007942684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526376
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45810.8702904387738042No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17670.3356915968813168No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16200.3077647917078286No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9760.18541878809064244No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8620.16376126571120264No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8600.16338130917823002No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8400.15958174384850374No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7890.14989285225770171No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7600.14438348252959862No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7600.14438348252959862No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7070.13431463440582397No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6470.12291593841664514No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6130.11645667735611046No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5840.11094730762800735No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5680.10790765536422633No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5500.10448804656747268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)