FastQCFastQC Report
Sun 21 May 2023
EGAF00007942690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405157
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44921.1087060077945092No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28360.6999755650278782No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12550.30975646477785157No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6540.16141890674479276No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6130.15129937283571554No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5860.14463528952973784No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5570.1374775704233174No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5330.1315539408180039No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4230.10440397179365038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)