FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444106
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20490.461376338081449No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19090.4298523325512378No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17190.38706975361737966No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14050.31636591264247726No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12260.27606021985742146No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12200.27470919104898384No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC12050.27133161902788977No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11490.25872201681580526No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10490.23620487000851148No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10410.23440349826392798No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9850.22179389605184346No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9050.20378017860600847No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8290.1866671470324652No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8120.1828392320752253No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7940.1787861456499124No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7620.1715806586715784No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7500.16887860105470318No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7200.16212345701251502No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6850.15424245562996222No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6550.1474873115877741No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5990.1348777093756896No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5890.1326259946949602No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5880.1324008232268873No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5740.12924842267386616No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5500.12384430744011565No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5270.1186653636744381No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5120.11528779165334402No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4760.10718161880271827No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4660.1049299041219889No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA4600.10357887531355127No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4550.10245301797318657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)