FastQCFastQC Report
Sun 21 May 2023
EGAF00007942692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444106
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44100.9930061742016546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25000.5629286701823438No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22550.5077616605044741No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21330.48029074139957584No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20970.47218456854894997No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC12440.2801133062827343No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12060.27155679049596265No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12040.27110644755981683No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10960.24678792900793955No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10420.2346286697320009No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10040.2260721539452293No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9940.2238204392644999No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9500.21391289466929064No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8980.2022039783294979No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8720.19634952015960155No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8130.18306440354329823No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7960.17923648858605828No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7620.1715806586715784No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7490.1686534295866302No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7210.16234862848058798No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6780.15266625535345163No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6630.1492886833323576No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6060.13645390965220014No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6050.1362287381841272No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6030.13577839524798133No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5690.12812256533350144No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5600.12609602212084503No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5160.11618847752563578No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5090.1146122772491252No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5020.11303607697261465No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG4790.10785713320693709No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4770.10740679027079121No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4680.10538024705813477No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4520.10177750356896777No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4510.10155233210089483No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4480.10087681769667602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)