FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461915
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51001.104099239037485No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50521.0937077167877207No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG24790.5366788261909659No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG19800.4286502928027884No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17460.37799162183518614No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9270.2006862734485782No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8350.18076918913652945No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6200.134223829059459No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6190.1340073390125889No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC5760.1246982669971748No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5280.11430674474741025No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5140.11127588409122889No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5090.11019343385687842No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5030.10889449357565786No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4860.10521416277886624No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4810.10413171254451577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)