FastQCFastQC Report
Wed 31 May 2023
EGAF00007942698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489243
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39590.8092093295151898No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24710.5050659897024588No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15390.3145676075079255No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11910.24343731029365773No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG11890.2430285154820815No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11590.23689659330843774No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10540.2154348657006845No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10280.21012053315019327No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9690.19806108620869387No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9650.19724349658554133No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9470.19356434328135508No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8710.1780301404414575No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8680.17741694822409312No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7550.15432004137003494No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7480.15288925952951807No Hit
GAACTGGCTCGCCGTCAACAGGAAGAACGTA7400.15125408028321302No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7400.15125408028321302No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7270.14859691400796743No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7250.14818811919639116No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7150.1461441451385099No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7130.14573535032693366No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7130.14573535032693366No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7090.14491776070378115No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7020.14348697886326428No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6900.14103420999380675No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6700.13694626187804423No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6050.12366043050181608No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5970.12202525125551106No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5860.11977687979184168No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5850.11957248238605356No Hit
GCAGCTGAACTGGCTCACCGTCAAGAAGCTG5730.11711971351659606No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5600.11446254724135042No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5540.11323616280662166No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5430.11098779134295228No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5320.1087394198792829No Hit
ACCCGTCAGAAAGCAGAACAGGAGCGTAGCT4990.10199430548827473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)