FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473234
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG27670.5847001694721851No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25800.5451848345638732No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25280.5341966130920432No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG24860.5253215111340267No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24330.5141219777108154No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15040.31781317487754474No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12080.2552648372686663No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12080.2552648372686663No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11230.23730332140125182No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8300.17538891964651734No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8280.17496629574375466No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8170.17264186427855985No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8070.1705287447647464No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8000.169049561105077No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7960.1682043132995516No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC7870.1663025057371195No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA7800.16482332207745004No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7640.1614423308553485No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7570.15996314719567908No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7450.15742740377910294No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7450.15742740377910294No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7440.1572160918277216No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7250.15320116475147602No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7120.15045410938351853No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7090.14982017352937446No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6970.14728443011279832No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6860.1449599986476035No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6510.1375640803492564No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5970.12615323497466369No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5940.12551929912051965No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5610.11854600472493523No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5190.1096709027669187No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5140.10861434301001195No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG5130.10840303105863061No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5120.10819171910724926No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5080.1073464713017239No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC4810.10164104861442753No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4810.10164104861442753No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4800.10142973666304618No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4740.10016186495475812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)