FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502443
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25820.5138891376733281No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19750.39307941398327767No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15110.30073063014113044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10230.20360518506576866No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9410.18728492585228573No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6060.12061069613866647No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5920.11782431041929134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)