FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420706
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47011.1174074056466987No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25870.6149187318459922No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19920.4734898004782437No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15240.36224822084781294No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15230.362010525164842No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14770.35107652374817566No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14500.34465874030795857No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12220.2904641245905692No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12070.2868986893460041No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11960.28428403683332304No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11280.26812073039129464No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10890.25885059875542543No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10740.25528516351086034No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8590.20418059167209404No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8320.1977628082318769No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8170.1941973729873118No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8160.1939596773043408No Hit
GAACCGATCTACGCTACCATCGACGACCTGG8140.19348428593839878No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7930.18849267659600766No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG7560.17969793632608044No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7380.17541941403260233No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7210.17137858742209525No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6690.15901841190760294No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6650.15806762917571893No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6510.15473988961412483No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6160.14642054071013963No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6130.1457074536612266No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6110.1452320622952846No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5860.13928967022100947No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5800.1378634961231834No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5710.13572423497644437No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5650.1342980608786183No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5280.1255033206086911No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5200.12360175514492305No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4780.11361853646014082No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4550.10815153575180766No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4380.10411070914130058No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4310.10244683936050354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)