FastQCFastQC Report
Wed 31 May 2023
EGAF00007942708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443377
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21570.4864934356089739No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13140.2963617869217393No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12060.2720032838870758No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11320.25531319847443595No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11180.25215561474772036No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10040.22644386154446441No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9780.22057977748056395No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8000.18043335581232225No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7100.16013460328343598No Hit
ACCGGCTTTCCACCTCAGCCGGGTATGGCCC6660.15021076871375827No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6650.14998522701899286No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6610.14908306023993126No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6300.14209126770220376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6140.13848260058595732No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5500.12404793212097154No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5390.12156697347855212No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5310.11976263992042888No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4860.10961326365598577No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4760.10735784670833173No Hit
TTTCCGCCTCAGCCGGGTATGGCACCGCGCC4620.1042002629816161No Hit

[OK]Adapter Content

Adapter graph