FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437511
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16560.37850476902295027No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15410.35221971561857873No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14490.3311916728950815No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12790.29233550699296706No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12400.28342144540365843No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10810.24707950200109252No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9240.21119468996208096No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7960.18193828269460652No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC7860.17965262587683511No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6180.14125359133827492No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5460.12479686225032055No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5050.11542566929745766No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5040.11519710361568052No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4650.10628304202637191No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4630.10582591066281762No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4540.10376881952682332No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4420.10102603134549759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)