FastQCFastQC Report
Wed 31 May 2023
EGAF00007942710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437511
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47471.085001291396102No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40260.9202054348347813No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30050.6868398737403174No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15500.354276806754573No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14300.32684892494131573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12780.2921069413111899No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9710.22193727700560673No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8180.1869667276937037No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5940.13576801497562346No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5640.12891104452230914No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5570.12731108474986916No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5240.11976841725122339No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5170.11816845747878339No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5150.1177113261152291No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5000.11428284088857193No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4880.11154005270724622No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4760.1087972645259205No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4710.10765443611703478No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4580.10468308225393191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)