FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396934
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43401.093380763552631No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30920.7789708112683721No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17290.43558878806048357No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16370.4124111313215799No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10190.2567177414885094No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9740.24538084417056738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8790.22144739427713425No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCAC8360.21061435906221185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7780.19600235807464214No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7470.18819249547783762No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6660.16778608030554198No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6550.16501483873893394No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6230.1569530450906196No Hit
ACCATGACCCGTCACCCGCACCCACATCTGT6180.1556933898330705No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6030.15191442406042316No Hit
ACCGTTCCTGCCAAATCCTGCCAGGACCAGC5940.14964704459683473No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5290.13327152624869626No Hit
TTCCCGCGTGGTTCCAACTCTAGCAACGATG5110.12873676732151945No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4730.11916338736414618No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC4450.11210931792187113No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4320.10883421425224346No Hit
ACCGTCCCGGCAAAATCCTGCCAGGCTCAGC4290.10807842109771398No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4190.10555911058261576No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT4080.1027878690160077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)