FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432621
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG18190.4204604029855231No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13640.3152875149380173No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13310.3076595911895169No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12010.2776101946045153No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11920.2755298517640151No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG10600.24501815677001348No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10260.23715908381701303No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9430.217973699843512No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8450.19532107780251073No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7680.17752258905600976No Hit
TGCAGCTGCACGCTGAGCCGCGGTACCCGGACGGCGACGGTGAC6620.15302077337900843No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6570.15186502735650834No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6300.145623998835008No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6130.1416944623585078No Hit
CAGGGACGGACCACCGGCAGCGATCATAGAGCTGAACGGGCGCT5420.1252828688390069No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5340.1234336752030068No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5080.11742379588600646No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4910.11349425940950623No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4490.1037859928205057No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC4450.10286139600250564No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4390.10147450077550557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)