FastQCFastQC Report
Sun 21 May 2023
EGAF00007942722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432621
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21890.5059856086505279No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18520.4280883267340235No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT15140.34995989561301927No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13200.30511694994001676No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13030.3011874134635166No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12960.2995693690320165No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12500.28893650562501594No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12220.2824643278990155No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC12060.2787659406270153No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8460.19555222700701078No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8120.18769315405401032No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7960.18399476678201013No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGT7560.17474879860200962No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7330.16943236689850932No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5760.13314194179200733No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5480.12666976406600697No Hit
TCCACCATGTCCCTGGGCCGTGGTTACGGCT5280.1220467799760067No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5060.11696149747700643No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4980.11511230384100633No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA4760.11002702134200605No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4400.10170564998000559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)