FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431307
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34450.7987350077786819No Hit
ATGTCCAACATGGACATCGATGGTATTAACA21460.49755742429406435No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20320.4711261352122734No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15170.3517216275182179No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8580.19893022835242644No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7660.1775997143565952No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7220.16739816418467587No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6430.14908174455782075No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5170.11986821452005185No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG4660.10804369045714537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)