FastQCFastQC Report
Sun 21 May 2023
EGAF00007942728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495543
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35140.7091211055347366No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16390.330748290259372No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11890.23993881459328453No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8200.1654750445470928No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7460.15054193077089173No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7200.14529516106574No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6640.13399442631618247No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6560.13238003563767423No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6310.12733506476733603No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5900.1190613125399814No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5720.1154289335133379No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5650.1140163416696432No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5650.1140163416696432No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5570.112401950991135No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5130.10352280225933974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)