FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479242
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT30890.644559533596805No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC28780.6005316729335075No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26510.5531652067222823No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24950.5206138026299865No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21060.4394439552459926No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16530.34491968567028763No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16320.34053776588863244No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG15710.32780933223715786No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15670.3269746808501759No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14920.31132496734426446No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13920.2904586826697159No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11790.2460134963129275No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10280.21450540645435917No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10130.2113754637531769No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG10010.20887150959223105No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9310.1942651103200471No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8430.17590277980644434No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8200.17110353433129818No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7710.16087905484076936No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7710.16087905484076936No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7450.15545382082538675No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7190.15002858681000414No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7080.14773329549580377No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6640.13855213023900242No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6500.13563085038456563No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6350.13250090768338335No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6130.12791032505498265No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6070.12665834797450976No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5750.11998113687865422No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5680.11852049695143582No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5660.11810317125794483No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5650.11789450841119935No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5500.11476456571001706No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5390.11246927439581672No Hit
CAGGTCACGCAGACCCACCAGGCGGCAGTTACGTGCTTCGATAC5380.11226061154907124No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5340.11142596016208929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)