FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479242
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA65241.3613164121675478No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA36210.7555681680654033No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35060.7315719406896725No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA34540.7207214726589072No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21960.4582236114530863No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18000.37559312414187407No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17600.36724661027205463No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15860.33093927493834013No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15560.3246793895359755No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12620.2633325125928028No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11510.24017093660405392No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10820.22577320017861538No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10220.21325342937388628No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9820.20490691550406684No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9680.20198563564963004No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9200.19196981900584673No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8820.18404063082951827No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8730.18216266520880892No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8520.17778074542715372No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8460.1765287683466808No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8070.16839091732360686No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8010.16713894024313394No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7620.15900108922006No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7480.1560798093656232No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7410.1546191694384048No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6980.14564666702834894No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT6820.14230806148042116No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6430.13417021045734723No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6300.13145759344965594No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6270.13083160490941945No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6250.1304142792159285No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6140.12811898790172815No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6000.12519770804729136No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5940.12394573096681843No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5570.11622520563723546No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5450.11372125147628964No Hit
GGTCACCACTATGACGGCGTTGCCATGCAGT5290.11038264592836187No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4990.10412276052599731No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4930.10287078344552439No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)