FastQCFastQC Report
Wed 31 May 2023
EGAF00007942731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470553
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA20450.43459504030364277No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15130.3215365750510569No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT14540.3089981362354506No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13260.2817960994829488No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11650.24758103763019257No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10700.2273920259779451No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8330.1770257548033909No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT7340.15598667950262776No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7080.1504612657872758No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6760.14366075659915037No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6410.13622269967463815No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6300.13388502464122No Hit
GGAGATTTCGCTGTTGTCGGACAGGATTTCCTGAGCTTCTGCGG6180.13133483369567298No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5630.11964645852858233No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5260.11178336977981226No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5210.11072079021916767No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4780.10158260599762409No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT4770.10137009008549516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)