FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470553
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31630.672187830063776No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC19780.4203564741910051No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15460.3285496001513113No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14650.3113358112688687No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13490.286683965461914No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11900.2528939354334156No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10310.2191039054049172No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8590.18255116851874284No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8030.17065027743952327No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC7680.16321222051501105No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6790.14429830433553711No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6550.13919792244444304No Hit
CCGTTCGCCTCTGATTACTCCCAGGGTGCGT6510.13834785879592734No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6430.13664773149889597No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5830.12389677677116075No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5750.12219664947412938No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5230.11114582204342552No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC4910.10434531285530005No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4780.10158260599762409No Hit
CCGTTCGCAAGCGACTACTCTCAGGGTGCAT4770.10137009008549516No Hit

[OK]Adapter Content

Adapter graph