FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516376
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61311.1873131206717586No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36040.6979410352146498No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26180.5069949029389437No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22880.4430879824004214No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20690.40067702604303834No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19200.37182208313322074No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18800.36407578973461197No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16550.32050288936743765No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14020.2715075836212372No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12790.24768773142051528No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12630.24458921406107179No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9980.1932700202952887No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9840.19055881760577564No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8990.174097944133732No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8980.1739042867987668No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8680.16809456674981021No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8250.1597673013463058No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8090.15666878398686226No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7450.14427471454908827No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7360.1425317985344013No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7180.13904596650502735No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7070.13691573582040995No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6780.13129967310641857No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6170.11948657567354021No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5840.11309588361968798No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5550.10747982090569663No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5510.10670519156583576No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5380.1041876462112879No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5350.10360667420639225No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5340.10341301687142702No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5240.10147644352177483No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5190.10050815684694873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)