FastQCFastQC Report
Sun 21 May 2023
EGAF00007942740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444592
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38440.8646129485010976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15950.3587558930435096No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13830.31107172418756973No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9840.22132651959549432No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7430.16711951632058158No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6920.15564832475618093No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6560.14755101306366286No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6460.14530175981574117No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6150.13832907474718392No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5850.13158131500341888No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5450.12258430201173211No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5330.11988519811422607No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5280.11876057149026523No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5280.11876057149026523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)