FastQCFastQC Report
Sun 21 May 2023
EGAF00007942741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490596
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG46900.9559800732170667No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21580.43987313390243704No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18020.3673083351678367No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17290.3524284747531574No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13080.2666144852383631No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12790.26070330781335355No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12630.2574419685443828No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10340.21076405025723813No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9780.19934936281584031No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9680.19731102577273357No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8810.17957749349770483No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG8140.1659206353088896No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7780.1585826219537053No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7690.15674811861490923No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG6940.14146059079160858No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6720.1369762492967737No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6000.12230022258640512No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5990.12209638888209444No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA5960.12148488776916241No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5470.11149703625793932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)