FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490596
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG46050.9386542083506592No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38570.7861865975262741No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA22290.454345326908495No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20450.4168399253153307No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17500.35670898254368155No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13710.27945600860993564No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12420.25316146075385854No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10500.21402538952620892No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10370.21137555137017017No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT8470.17264714755114186No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG8470.17264714755114186No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8370.1706088105080351No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT8070.16449379937871486No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT7760.15817495454508393No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7700.15695195231921988No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6340.12923056853296808No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6300.12841523371572539No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC6010.12250405629071578No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5930.12087338665623037No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5780.11781588109157025No Hit

[OK]Adapter Content

Adapter graph