FastQCFastQC Report
Wed 31 May 2023
EGAF00007942743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438122
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG12650.2887323622187427No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10970.2503868785406804No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10550.2408005076211649No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8450.19286865302358705No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6560.149729983885767No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6370.14539329227931946No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6230.1421978353061476No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6200.14151309452618221No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6180.14105660067287193No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6040.1378611436997001No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5320.12142736498053054No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5310.1211991180538754No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4460.10179812928818913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)