FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438122
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36990.8442853816973354No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15420.35195676090221445No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14580.33278401906318333No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG12750.29101483148529406No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10910.24901739698074965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8560.1953793692167935No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7300.1666202564582468No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6880.15703388553873124No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6600.15064297159238751No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6460.14744751461921565No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6120.13968711911294113No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5550.12667704429359858No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4910.11206924098767011No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4780.10910203094115338No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4560.10408059855474047No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4460.10179812928818913No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4440.10134163543487887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)