FastQCFastQC Report
Sun 21 May 2023
EGAF00007942749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431625
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17850.4135534317984362No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15900.368375325803649No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14980.34706052707790325No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14890.3449753837242977No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14450.334781349551115No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13000.301187373298581No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12700.29423689545322906No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11900.2757022878656241No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11770.2726904141326383No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11360.26319142774399074No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10520.24373008977700553No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9380.21731827396466843No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9380.21731827396466843No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9310.21569649580075295No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9280.2150014480162178No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8870.20550246162757022No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8680.20110049232551405No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8530.1976252534028381No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8380.19415001448016217No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7590.17584708948740227No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7280.16866492904720531No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7010.16240949898638865No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6970.16148276860700841No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6770.15684911671010715No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6660.1543006081668115No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6430.14897190848537503No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6300.14596003475238922No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6230.1443382565884738No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6050.14016796988126268No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5960.1380828265276571No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5790.13414422241529103No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5780.13391253982044599No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5760.13344917463075587No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5600.12974225311323487No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5510.1276571097596293No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG5310.12302345786272806No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5270.12209672748334781No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5170.11977990153489719No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4990.11560961482768607No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4960.11491456704315088No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4960.11491456704315088No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4920.11398783666377063No Hit
GTTACCACGGTTGGCAACGGATTTGTTATAGTTGTGTGCAACCG4850.1123660584998552No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4740.10981754995655951No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4710.10912250217202434No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4620.10703735881841876No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4550.10541558065450332No Hit
GTAACCTGGCTGCAGGTTCGGCGGCAGGCTGCCGGTATCAGAAG4550.10541558065450332No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4540.10518389805965828No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4500.10425716768027803No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4320.10008688097306691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)