FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464334
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23240.5005017939672736No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20710.44601515288563837No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10120.2179465643265408No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10100.21751583989111284No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9220.19856396473228324No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8660.18650368054030073No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5570.11995675526668304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)