FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501225
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23500.468851314280014No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21110.42116813806174874No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19380.38665270088283704No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14310.2855005237168936No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13450.26834256072622076No Hit
ATGTCCAACATGGACATCGATGGTATTAACA13340.26614793755299515No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12720.2537782433039054No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12660.25258117611850966No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11970.23881490348645817No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10410.2076911566661679No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9060.1807571449947628No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8650.17257718589455834No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8260.16479624918948577No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8190.163399670806524No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8120.16200309242356226No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7740.15442166691605566No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7680.15322459973065988No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7220.14404708464262556No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6590.13147787919596987No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6320.12609107686168886No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6040.12050476332984188No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5790.1155169833906928No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5620.11212529303207142No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5610.11192578183450547No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5280.10534191231482866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)