FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442962
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38540.8700520586415991No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27240.6149511696262885No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20360.45963310622581616No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20350.45940735322668763No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14010.3162799517791594No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12980.29302739286891427No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12850.29009260388024255No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12480.2817397429124846No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11890.2684203159638976No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11100.2505858290327387No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11080.2501343230344815No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9160.20678974720179155No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9050.20430646421137705No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8330.18805224827411834No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8260.18647197728021817No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7900.1783448693115888No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7600.171572279337731No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7090.16005887638217275No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7070.15960737038391556No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6270.14154713045362807No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5880.13274276348761294No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5440.12280963152595482No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5280.11919758353989733No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5180.1169400535486114No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5150.11626279455122562No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5050.11400526455993967No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5050.11400526455993967No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5020.1133280055625539No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5010.1131022525634253No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4940.11152198156952516No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4920.11107047557126797No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4730.10678116858782469No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4640.10474939159566735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)