FastQCFastQC Report
Sun 21 May 2023
EGAF00007942757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442377
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25880.5850213731726559No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24740.5592514981565497No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14620.3304873445048002No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7720.17451178519678917No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7140.16140079615350708No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6440.14557718868747696No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5880.13291830271465288No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5880.13291830271465288No Hit
GCACCAGGAGATGCGGGTCAGTTCCGGCTGACGCCATTCCTCCA5550.12545860205209586No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5330.12048546827705782No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5240.1184510044599968No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4480.10127108778259268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)