FastQCFastQC Report
Sun 21 May 2023
EGAF00007942758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442377
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62341.4092052706175953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14730.3329739113923192No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12460.2816602128953359No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10560.2387104212018256No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8320.18807487731052924No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7520.16999075449220913No Hit
CTGCGTGCCGAAGCTAAATTCTACCAGGGTA6420.14512508561701898No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6320.14286457026472896No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6230.14083010644766794No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5120.11573838603724877No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4800.10850473690992071No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4710.1064702730928597No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4620.10443580927579871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)