FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374503
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9190.24539189272182066No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT8690.23204086482618297No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7930.21174730242481368No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5940.1586102114001757No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5660.1511336357786186No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5500.14686130685201454No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5400.144191101272887No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5060.13511240230385338No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5060.13511240230385338No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4930.13164113505098757No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4900.13084007337724932No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4780.12763582668229626No Hit
CGCGGACAGAGTCACGCCAGACGCCGGAGCCCAGTTGCCCAGTG4700.12549966221899422No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT4630.12363051831360496No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4490.11989223050282642No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4470.11935818938700091No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4330.11561990157622234No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA4210.11241565488126931No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG3980.10627418204927598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)