FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374503
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33710.9001263007238927No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13160.3513990542131839No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9930.2651514140073644No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8850.236313193752787No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8780.23444404984739775No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7350.19626011006587396No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6190.16528572534799454No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5840.15594000582104817No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5620.15006555354696757No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5430.14499216294662526No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5410.14445812183079976No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5370.14339003959914873No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5010.13377729951428963No Hit
ACCGTTACCCCGCCAACTCAGACCGGTTGCG4940.13190815560890035No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT4830.12897092947186004No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4730.1263007238927325No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4590.12256243608195394No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4460.11909116882908816No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4380.11695500436578612No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4310.11508586046039684No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4070.10867736707049075No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4050.10814332595466525No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4010.10707524372301425No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC3800.1014678120068464No Hit

[OK]Adapter Content

Adapter graph