FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414634
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22520.543129603457507No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19440.46884722429902037No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17410.4198883834900177No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16360.3945648451405335No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14470.34898247611146216No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13660.329447175099003No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12120.2923059855197596No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12070.29110010274121273No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11080.26722362372598485No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9760.23538831837234767No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8410.20282948335158235No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7750.18691183067476377No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6860.1654471172166296No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6660.16062358610244215No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6540.15772946743392968No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6400.15435299565399846No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5700.1374706367543424No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5640.13602357742008614No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5530.13337063530728305No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4990.12034710129897692No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4650.11214709840485827No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4560.10997650940347392No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4500.10852945006921766No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4340.1046706251778677No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4280.10322356584361148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)