FastQCFastQC Report
Sun 21 May 2023
EGAF00007942766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388251
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34480.8880852850346812No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16310.4200890660938414No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11910.30676031742352244No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8480.21841540652825106No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6930.17849277915575232No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6830.17591712577688146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6580.16947799232970423No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6480.16690233895083334No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5690.14655467725775337No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4870.1254343195510121No Hit
TCCGCAAACCGTCGTCGTAAACGTCAGCGCG4700.1210557088069316No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4460.11487414069764149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)