FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391638
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34530.8816815528625924No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16360.4177327021381991No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11820.30180932391647386No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8760.22367594564368115No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7370.1881839862321838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6940.17720445921999398No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6740.17209770247013825No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6200.15830945924552775No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6100.1557560808705999No Hit
TCCGCAAACCGTCGTCGTAAACGTCAGCGCG4820.12307283767152319No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4790.12230682415904483No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4580.11694472957169631No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4360.11132729714685502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)