FastQCFastQC Report
Wed 31 May 2023
EGAF00007942769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417600
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9750.2334770114942529No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9490.22725095785440613No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9340.22365900383141762No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7830.1875No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7190.17217432950191572No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6510.15589080459770113No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6440.15421455938697318No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6160.1475095785440613No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5220.125No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT4520.1082375478927203No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4420.10584291187739464No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4250.101772030651341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)