FastQCFastQC Report
Sun 21 May 2023
EGAF00007942770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417600
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22920.5488505747126436No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9890.2368295019157088No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9580.22940613026819923No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8230.19707854406130265No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7400.1772030651340996No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7370.1764846743295019No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6780.16235632183908044No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6140.14703065134099616No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5860.14032567049808428No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG4900.11733716475095786No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4740.1135057471264368No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4310.10320881226053641No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4230.10129310344827586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)